BICAN
Basal Ganglia Epigenome
DATA
CHAT
Explore Neural Architecture
Through Epigenetic Landscapes
Multi-species comparative genomics • Cross-genome analysis • Advanced visualization
Primary Genome
Human (hg38)
Mouse (mm10)
Cross-Genome
Add Mouse Tracks
Select Taxonomies
Glut Sero Dopa
neighborhood
F M Glut
class
F Glut
subclass
BF SKOR1 Glut
group
STH PVALB-PITX2 Glut
group
F M Glut
subclass
VTR-HTH Glut
group
M Dopa
class
M Dopa
subclass
SN SOX6 Dopa
group
SN-VTR CALB1 Dopa
group
SN-VTR GAD2 Dopa
group
Nonneuron
neighborhood
Astro-Epen
class
Astrocyte
subclass
Astrocyte
group
ImAstro
group
Ependymal
subclass
Ependymal
group
Immune
class
Lymphocyte
subclass
B cells
group
T cells
group
Macrophage
subclass
BAM
group
Microglia
subclass
Microglia
group
Monocyte
subclass
Monocyte
group
OPC-Oligo
class
COP
subclass
COP
group
OPC
subclass
OPC
group
Oligodendrocyte
subclass
ImOligo
group
Oligo OPALIN
group
Oligo PLEKHG1
group
Vascular
class
Endo
subclass
Endo
group
Pericyte
subclass
Pericyte
group
SMC
subclass
SMC
group
VLMC
subclass
VLMC
group
Subpallium GABA
neighborhood
CN CGE GABA
class
CN LAMP5-CXCL14 GABA
subclass
LAMP5-CXCL14 GABA
group
CN VIP GABA
subclass
VIP GABA
group
CN LGE GABA
class
CN MEIS2 GABA
subclass
GPe MEIS2-SOX6 GABA
group
OT Granular GABA
subclass
OT D1 ICj
group
STR D1 MSN
subclass
STRd D1 Matrix MSN
group
STRd D1 Striosome MSN
group
STRv D1 MSN
group
STR D2 MSN
subclass
STRd D2 Matrix MSN
group
STRd D2 StrioMat Hybrid MSN
group
STRd D2 Striosome MSN
group
STRv D2 MSN
group
STR Hybrid MSN
subclass
STR D1D2 Hybrid MSN
group
STRv D1 NUDAP MSN
group
CN MGE GABA
class
CN Cholinergic GABA
subclass
GPin-BF Cholinergic GABA
group
STR Cholinergic GABA
group
STRd Cholinergic GABA
group
CN LAMP5-LHX6 GABA
subclass
LAMP5-LHX6 GABA
group
CN ST18 GABA
subclass
STR FS PTHLH-PVALB GABA
group
STR TAC3-PLPP4 GABA
group
STR-BF TAC3-PLPP4-LHX8 GABA
group
STR RSPO2 GABA
subclass
STR LYPD6-RSPO2 GABA
group
STR SST-RSPO2 GABA
group
STR SST GABA
subclass
STR SST-ADARB2 GABA
group
STR SST-CHODL GABA
subclass
STR SST-CHODL GABA
group
Cx GABA
class
ACx MEIS2 GABA
subclass
OB Dopa-GABA
group
OB FRMD7 GABA
group
F M GABA
class
CN LHX8 GABA
subclass
GPe SOX6-CTXND1 GABA
group
GPe-NDB-SI LHX6-LHX8-GBX1 GABA
group
CN ONECUT1 GABA
subclass
GPi Core
group
F GABA
subclass
AMY-SLEA-BNST D1 GABA
group
AMY-SLEA-BNST GABA
group
ZI-HTH GABA
group
F M GATA3 GABA
subclass
SN GATA3-PVALB GABA
group
SN-VTR-HTH GATA3-TCF7L2 GABA
group
SN PAX7 GABA
subclass
SN EBF2 GABA
group
SN SEMA5A GABA
group
Subpallium GABA-Glut
neighborhood
CN GABA-Glut
class
CN GABA-Glut
subclass
GPi Shell
group